Jonathan Fischer

Jonathan Fischer,

Clinical Assistant Professor

Department: PHHP-COM BIOSTATISTICS
Business Phone: (352) 294-5459
Business Email: jfischer1@ufl.edu

About Jonathan Fischer

Jonathan Fischer is a Clinical Assistant Professor in the Department of Biostatistics. He has experience teaching undergraduate and graduate students in probability, statistics, data science, and computational biology. His research interests generally lie in the development and application of methods for use with high-throughput sequencing data, particularly the transcriptomic variety. Dr. Fischer earned his PhD in Statistics in 2018 from the University of California, Berkeley, and received a BS in Physics and Mathematics from the College of William & Mary in 2013.

Research Profile

Open Researcher and Contributor ID (ORCID)

0000-0002-1165-9930

Publications

2021
Likelihood-based deconvolution of bulk gene expression data using single-cell references.
Genome research. 31(10):1794-1806 [DOI] 10.1101/gr.272344.120. [PMID] 34301624.
2021
Numerous Post-translational Modifications of RNA Polymerase II Subunit Rpb4/7 Link Transcription to Post-transcriptional Mechanisms.
Cell reports. 34(2) [DOI] 10.1016/j.celrep.2020.108578. [PMID] 33440147.
2020
The yeast exoribonuclease Xrn1 and associated factors modulate RNA polymerase II processivity in 5′ and 3′ gene regions.
The Journal of biological chemistry. 295(33):11435-11454 [DOI] 10.1074/jbc.RA120.013426. [PMID] 32518159.
2019
Three-way clustering of multi-tissue multi-individual gene expression data using semi-nonnegative tensor decomposition
The Annals of Applied Statistics. 13(2):1103-1127 [DOI] 10.1214/18-aoas1228. [PMID] 33381253.
2017
OPERATOR NORM INEQUALITIES BETWEEN TENSOR UNFOLDINGS ON THE PARTITION LATTICE.
Linear algebra and its applications. 520:44-66 [DOI] 10.1016/j.laa.2017.01.017. [PMID] 28286347.
2014
Ground state of graphene heterostructures in the presence of random charged impurities
Physical Review B. 90(3) [DOI] 10.1103/physrevb.90.035406.
Robust and annotation-free analysis of alternative splicing across diverse cell types in mice
. [DOI] 10.1101/2021.04.27.441683.

Education

PhD, Statistics
2018 · University of California, Berkeley
BS, Physics and Mathematics
2013 · The College of William & Mary

Teaching Profile

Courses Taught
2020-2021
PHC6052 Introduction to Biostatistical Methods
2020-2021
PHC6946 Public Health Internship
2021
PHC6088 Statistical Analysis of Genetic Data
2021
PHC6050 Statistical Methods for Health Sciences Research I
2021
PHC6601 Seminar in Contemporary Public Health Issues
2021
PHC6941 MPH Applied Practice Experience
2021
PHC6937 Special Topics in Public Health
2021
PHC6089 Public Health Computing

Contact Details

Phones:
Business:
(352) 294-5459
Emails:
Business:
jfischer1@ufl.edu