2018 Publications

Rhonda Bacher, Ph.D.

  • “Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.”
  • “Genetic Drivers of Pancreatic Islet Function”

Babette Brumback, PhD.

  • Crowley SJ, Huang H, Tanner JJ, Zho Q, Schwab NA, Hizel LP, Ramon D, Brumback B, Ding M, Price CC (2018). “Considering Total Intracranial Volume and Other Nuisance Variables in Brain Voxel Based Morphometry in Idiopathic PD.” Brain Imaging and Behavior, 12:1-12.
  • Jeon N, Staley B, Johns T, Lipori GP, Brumback B, Richard S, Winterstein AG (2017). “Identifying and characterizing preventable adverse drug events for prioritizing pharmacist intervention in hospitals.” Am J Heal Pharm 74(21): 1774-1783.
  • Winterstein A, Staley B, Henriksen C, Xu D, Lipori G, Jeon N, Choi Y, Li Y, Castillo JH, Soria-Saucedo R, Brumback B, Johns T (2017). “Development and validation of a Complexity-Score to rank hospitalized patients at risk for preventable adverse drug events.” American Journal of Health-System Pharmacy, 74: 1970-1984
  • Mira JC, Cuschieri J, Ozrazgat-Baslanti T, Wang Z, Ghita GL, Loftus TJ, Stortz JA, Raymond SL, Lanz JD, Hennessy LV, Brumback B, Efron PA, Baker HV, Moore FA, Maier RV, Moldawer LL, Brakenridge SC (2017). “The epidemiology of chronic critical illness after severe traumatic injury at two-level one trauma centers.” Critical Care Medicine, 45: 1989-1996.
  • Loftus T, Mira J, Ozrazgat-Baslanti T, Ghita G, Wang Z, Stortz J, Brumback B, Bihorac A, Segal M, Anton S, Leeuwenburgh C, Mohr A, Efron P, Moldawer L, Moore F, Brakenridge S (2017). “Sepsis and Critical Illness Research Center Investigators: protocols and standard operating procedures for a prospective cohort study of sepsis in critically ill surgical patients.” BMJ Open, 2017;7:e015136. doi:10.1136/bmjopen-2016-015136.
  • Cook R, Zhou Z, Kelso-Chichetto N, Janelle J, Morano J, Somboonwit C, Carter W, Ibanez G, Ennis N, Cook C, Cohen R, Brumback B, Bryant K (2017). “Alcohol consumption patterns and HIV viral suppression among persons receiving HIV care in Florida: an observational study.” Addiction Science & Clinical Practice, 12:22.
  • Hall AG, Schumacher JR, Brumback B, Harman JS, Lutz BJ, Hendry P, Carden D (2017). “Health-Related Quality of Life among Older Patients Following an Emergency Department Visit and ED-to-Home Coaching Intervention: A Randomized Controlled Trial.” International Journal of Care Coordination, 20: 162-170.
  • Khandelwal N, Brumback LC, Halpern SD, Coe NB, Brumback B, Curtis JR (2017). “Evaluating the economic impact of palliative and end-of-life care interventions on ICU utilization and costs from the hospital and healthcare system perspective.” Journal of Palliative Medicine, 20: 1314-1320
  • Stortz JA, Murphy TJ, Raymond SL, MiraJC, Ungaro R, Dirain ML, Nacionales DC, Loftus TJ, Wang Z, Ozrazgat-Baslanti T, Ghita GL, Brumback BA, Mohr AM, Bihorac A, Efron PA, Moldawer LL, Moore FA, Brakenridge SC (2018). “Evidence for Persistent Immune Suppression in Patients Who Develop Chronic Critical Illness After Sepsis.” Shock, 49: 249-258.
  • Wang Y, Chen X, Hahn J, Brumback B, Zhou Z, Miguez M, Cook R (2018). “Phosphatidylethanol (PEth) in comparison to self-reported alcohol consumption among HIV-infected women in a randomized controlled trial of naltrexone for reducing hazardous drinking.” Alcoholism: Clinical & Experimental Research, 42: 128-134.
  • Stortz JA, Mira JC, Raymond SL, Loftus TJ, Ozrazgat-Baslanti T, Wang Z, Ghita GL, Leeuwenburgh C, Segal MS, Bihorac A, Brumback BA, Mohr AM, Efron PA, Moldawer LL, Moore FA, Brakenridge SC (2018). “Benchmarking clinical outcomes and the immunocatabolic phenotype of chronic critical illness after sepsis in surgical intensive care unit patients.” J Trauma Acute Care Surg, 84(2): 342-349.

Yueh-Yun Chi, PhD.

  • Zhang, X., Muller, K. E., Goodenow, M. M., & Chi, Y. Y. (2018). Internal pilot design for balanced repeated measures. Statistics in medicine, 37(3), 375-389.
  • Fernandez, C. V., Mullen, E. A., Chi, Y. Y., Ehrlich, P. F., Perlman, E. J., Kalapurakal, J. A., … & Tochner, Z. (2018). Outcome and prognostic factors in stage III favorable-histology Wilms tumor: A report from the Children’s Oncology Group Study AREN0532. Journal of Clinical Oncology, 36(3), 254.
  • Dix, D. B., Seibel, N. L., Chi, Y. Y., Khanna, G., Gratias, E., Anderson, J. R., … & Perlman, E. J. (2018). Treatment of Stage IV Favorable Histology Wilms Tumor With Lung Metastases: A Report From the Children’s Oncology Group AREN0533 Study. Journal of Clinical Oncology, 36(16), 1564-1570.
  • von Versen-Hoynck, F., Petersen, J. S., Chi, Y. Y., Liu, J., & Baker, V. L. (2018). First trimester pregnancy ultrasound findings as a function of method of conception in an infertile population. Journal of assisted reproduction and genetics, 35(5), 863-870.
  • Williams, J. C., Zhang, X., Karki, M., Chi, Y. Y., Wallet, S. M., Rudy, B. J., … & Sleasman, J. W. (2018). Soluble CD14, CD163, and CD27 biomarkers distinguish ART-suppressed youth living with HIV from healthy controls. Journal of leukocyte biology, 103(4), 671-680.
  • Teot, L. A., Schneider, M., Thorner, A. R., Tian, J., Chi, Y. Y., Ducar, M., … & van Hummelen, P. (2018). Clinical and mutational spectrum of highly differentiated, paired box 3: forkhead box protein o1 fusion-negative rhabdomyosarcoma: A report from the Children’s Oncology Group. Cancer, 124(9), 1973-1981.

Somnath Datta, PhD.

  • Chakraborty, S., Datta, So., and Datta, S. (2017). Nonparametric regression of state occupation probabilities in a multistate model. In Disease Modelling and Public Health, Handbook of Statistics, volume 36, Chapter 7, pp. 175-203, C.R. Rao, A. S. Rao, S. Pyne, eds., Elsevier, Amsterdam, Netherlands.
  • Sá, A.C.C., Webb, A., Gong, Y., McDonough, C.W., Shahin, M., Datta, S., Langaee, T.Y., Turner, S.T., Beitelshees, A.L., Chapman, A.B., Boerwinkle, E., Gums, J.G., Scherer, S.E, Cooper-DeHoff, R.M., Sadee, W., Johnson, J.A. (2018). Blood pressure signature genes and blood pressure response to Thiazide Diuretics: Results from the PEAR and PEAR-2 studies. BMC Medical Genomics, 11, 55.
  • Grimes, T.L., Walker, A.R., Datta, S., Datta, So. (2018). Predicting survival times for neuroblastoma patients using RNA-Seq expression profiles. Biology Direct, 13, 11.
  • Walker, A.R., Grimes, T.L., Datta, So., Datta, S. (2018). Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles. Biology Direct, 13, 10.
  • Choo-Wosoba, H., Gaskins, J., Levy, S. M., and Datta, S. (2018). A Bayesian approach for analyzing zero-inflated clustered count data with dispersion. Statistics in Medicine, 37, 801-812.
  • Siriwardena, C., Kulasekera, K. B., and Datta, S. (2018). Semi-parametric regression of state occupational probability in a multi-state model with right-censored data. Lifetime Data Analysis, 24, 464-491.
  • Sá, A.C.C., Webb, A., Gong, Y., McDonough, C. W., Datta, S., Langaee, T. Y., Turner, S. T., Beitelshees, A. L., Chapman, A. B., Boerwinkle, E., Gums, J. G., Scherer, S. E., Cooper-DeHoff, R. M., Sadee, W., Johnson, J. A. (2017). Whole transcriptome sequencing analyses reveal molecular markers of blood pressure response to Thiazide Diuretics. Scientific Reports – Nature, 7, 16068.
  • Sikdar, S., Datta, So., and Datta, S. (2017). EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments. PLOS One, 12(10): e0187287.
  • Analyzing clustered count data with a cluster specific random effect zero-inflated Conway-Maxwell Poisson distribution. (2018). Journal of Applied Statistics, 45, 799-814.
  • Nevalainen, J., Oja, H., and Datta, S. (2017). Tests for informative cluster size using a novel balanced bootstrap scheme. Statistics in Medicine, 36, 2630-2640
  • Pesonen, M., Nevalainen, J., Potter, S. S, Datta, So., Datta, S. (2018). A Combined PLS and negative binomial regression model for inferring association networks from next-generation sequencing count data. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15, 760-773.
  • Pesonen, M., Nevalainen, J., Potter, S. S, Datta, So., Datta, S. (2018). A Combined PLS and negative binomial regression model for inferring association networks from next-generation sequencing count data. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15, 760-773.
  • Lorenz, D. J., Levy, S., and Datta, S. (2018). Inferring marginal association with paired and unpaired clustered data with applications to dental studies. Statistical Methods in Medical Research, 27, 1806-1817.
  • Abdia, Y., Kulasekera, K. B., Datta, S., Boakye, M., and Kong, M. (2017). Propensity scores based methods for estimating average treatment effect and average treatment effect among treated: A comparative study. Biometrical Journal, 59, 967-985.

Susmita Datta, PhD.

  • Datta, S. (2017) Let’s Chat: Top WSDS Speakers Provide Insights Into Their Careers This year’s WSDS keynote speaker is Donna Brogan, and the plenaries will be from Jeri Mulrow, Bonnie Ray, and Susmita Datta. Here, they reflect on their long careers, share advice for the future, and discuss the topics they plan to talk about. AmStat News 1 June, 2017
  • Profiling the effects of short time-course cold ischemia on tumor protein phosphorylation using a Bayesian approach Y Wu, J Gaskins, M Kong, S Datta – Biometrics, 2018
  • Pilot Study of Metabolomics and Psychoneurological Symptoms in Women With Early Stage Breast Cancer Show less (2018) Debra E. Lyon, RN, PhD, FAAN, Angela Starkweather, PhD, RN, FAAN, Yingwei Yao, PhD, , , Timothy Garrett, PhD, Debra Lynch Kelly, PhD, RN, Victoria Menzies, PhD, RN, FAAN, Pawel‚ Derezinski, PhD, Susmita Datta, PhD, Sreelakshmy Kumar, BS, Colleen Jackson-Cook, PhD, FACMG, Debra E. Lyon, RN, PhD, FAAN, Angela Starkweather, PhD, RN, FAAN, Yingwei Yao, PhD, Timothy Garrett, PhD, Debra Lynch Kelly, PhD, RN, Victoria Menzies, PhD, RN, FAAN, Pawel‚ Derezinski, PhD, Susmita Datta, PhD, Sreelakshmy Kumar, BS, Colleen Jackson-Cook, PhD, FACMG; Biological Research For Nursing
  • Mikuls, T. R., Walker, C., Qiu, F., Yu, F., Thile, G. M., Alfant, B., Li, E., Zhao, L., Y., Wang, G., P., Datta, S., Payne, J., B., (2018) The Subgingival Microbiome in Patients with Established Rheumatoid Arthritis. Rheumatology, Volume 57, Issue 7, 1 July 2018, Pages 1162-1172.
  • Walker AR, Grimes TL, Datta S, Datta S. Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles. Biology Direct. 2018;13:10. doi:10.1186/s13062-018-0215-8.
  • Grimes, T., Walker, A. R., Datta, S. Datta S. (2018). Predicting survival times for neuroblastoma patients using RNA-seq expression profiles. Biology Direct 201813:11
  • Mitra, R., Gill, R., Sikdar, S., Datta, S. Bayesian Hierarchical Model for Protein Identifications. Journal of Applied Statistics. Journal of Applied Statistics

Natalie Dean, PhD.

  • Wilder-Smith, A., Longini, I., Zuber, P. L., Barnighausen, T., Edmunds, W. J., Dean, N., … & Gessner, B. D. (2017). The public health value of vaccines beyond efficacy: methods, measures and outcomes. BMC medicine, 15(1), 138. https://doi.org/10.1186/s12916-017-0911-8
  • Gsell, P. S., Camacho, A., Kucharski, A. J., Watson, C. H., Bagayoko, A., Nadlaou, S. D., “¦ Kéïta, S. (2017). Ring vaccination with rVSV-ZEBOV under expanded access in response to an outbreak of Ebola virus disease in Guinea, 2016: an operational and vaccine safety report. The Lancet Infectious Diseases, 17(12), 1276-1284. https://doi.org/10.1016/S1473-3099(17)30541-8
  • Ma, M.-J., Zhao, T., Chen, S.-H., Xia, X., Yang, X.-X., Wang, G.-L., “¦ Cao, W.-C. (2018). Avian Influenza A Virus Infection among Workers at Live Poultry Markets, China, 2013-2016. Emerging Infectious Diseases, 24(7), 2013-2016. https://doi.org/https://doi.org/10.3201/eid2407.172059
  • Dean, N. E., Halloran, M. E., & Longini, I. M. (2018). Design of Vaccine Trials During Outbreaks With and Without a Delayed Vaccination Comparator. Annals of Applied Statistics, 12(1), 330-347. https://doi.org/10.1214/17-AOAS1095

Meenakshi Devidas, PhD.

  • Slayton, W.B., Schultz, K.R., Kairalla, J.A, Devidas, M., Mi, X., Pulsipher, M.A., … & Hunger, S.P. (2018). Dasatinib Plus Intensive Chemotherapy in Children, Adolescents, and Young Adults With Philadelphia Chromosome-Positive Acute Lymphoblastic Leukemia: Results of Children’s Oncology Group Trial AALL0622. Journal of clinical oncology, JCO2017767228.
  • Churchman, M.L., Qian, M., Te Kronnie, G., Zhang, R., Yang, W., Zhang, H., … & Mullighan, C.G. (2018). Germline Genetic IKZF1 Variation and Predisposition to Childhood Acute Lymphoblastic Leukemia. Cancer cell, 33(5), 937-948.
  • Burns, M.A., Liao, Z.W., Yamagata, N., Pouliot, G.P., Stevenson, K.E., Neuberg, D.S., … & Gutierrez, A. (2018). Hedgehog pathway mutations drive oncogenic transformation in high-risk T-cell acute lymphoblastic leukemia. Leukemia. DOI: 10.1038/s41375-018-0097-x
  • Bride, K.L., Vincent, T.L., Im, S.Y., Aplenc, R., Barrett, D.M., Carroll, W.L., … & Teachey, D.T. (2018). Preclinical efficacy of daratumumab in T-cell acute lymphoblastic leukemia. Blood, 131(9), 995-999.
  • Qian, M., Cao, X., Devidas, M., Yang, W., Cheng, C., Dai, Y., … & Yang, J.J. (2018). TP53 Germline Variations Influence the Predisposition and Prognosis of B-Cell Acute Lymphoblastic Leukemia in Children. Journal of Clinical Oncology, 36(6), 591-599.
  • Barredo, J.C., Hastings, C., Lu, X., Devidas, M., Chen, Y., Armstrong, D., … & Hunger, S.P. (2018). Isolated late testicular relapse of B-cell acute lymphoblastic leukemia treated with intensive systemic chemotherapy and response-based testicular radiation: A Children’s Oncology Group study. Pediatric Blood & Cancer, 65(5), e26928.
  • Wood, B., Wu, D., Crossley, B., Dai, Y., Williamson, D., Gawad, C., … & Kirsch, I. (2018). Measurable residual disease detection by high throughput sequencing improves risk stratification for pediatric B-ALL. Blood, 131(12), 1350-1359.
  • Hardy, K.K., Embry, L.M., Kairalla, J.A., Helian, S., Devidas, M., Armstrong, F.D., … & Winick, N. (2017). Reply to I.J. Cohen. Journal of Clinical Oncology, 35(35), 3989-3991.
  • Gupta,S., Devidas, M., Loh, M.L., Raetz, E.A., Chen, S., Wang, C., … & Wood, B.L. (2018). Flow cytometric vs. -morphologic assessment of remission in childhood acute lymphoblastic leukemia: a report from the Children’s Oncology Group (COG). Leukemia, 32(6), 1370-1379.
  • DiNofia, A.M., Seif, A.E., Devidas, M., Li, Y., Hall, M., Huang, Y.V., … & Aplenc, R. (2018). Cost comparison by treatment arm and center-level variations in cost and inpatient days on the phase III high-risk B acute lymphoblastic leukemia trial AALL0232. Cancer medicine, 7(1), 3-12.
  • Salzer, W.L., Burke, M.J., Devidas, M., Chen, S., Gore, L., Larsen, E.C., … & Hunger, S.P. (2018). Toxicity associated with intensive postinduction therapy incorporating clofarabine in the very high-risk stratum of patients with newly diagnosed high-risk B-lymphoblastic leukemia: A report from the Children’s Oncology Group study AALL1131. Cancer, 124(6), 1150-1159.
  • Burke, M.J., Devidas, M., Maloney, K., Angiolillo, A., Schore, R., Dunsmore, K., Bleyer, A. (2018). Severe pegaspargase hypersensitivity reaction rates (grade ≥3) with intravenous infusion vs. intramuscular injection: analysis of 54,280 doses administered to 16,534 patients on children’s oncology group (COG) clinical trials. Leukemia & Lymphoma, 59(7),1624-1633.
  • Zheng, D.J., Lu, X., Schore, R.J., Balsamo, L., Devidas, M., Winick, N.J., … & Kadan-Lottick, N.S. (2018) Longitudinal analysis of quality-of-life outcomes in children during treatment for acute lymphoblastic leukemia: A report from the Children’s Oncology Group AALL0932 trial. Cancer. 124(3):571-579
  • Rau, R.E., Dreyer, Z., Choi, M.R., Liang, W., Skowronski, R., Allamneni, K.P., … & Hunger, S.P. (2018) Outcome of pediatric patients with acute lymphoblastic leukemia/lymphoblastic lymphoma with hypersensitivity to pegaspargase treated with PEGylated Erwinia asparaginase, pegcrisantaspase: A report from the Children’s Oncology Group. Pediatric Blood & Cancer, 65(3), e26873.
  • Liu, Y., Easton, J., Shao, Y., Maciaszek, J., Wang, Z., Wilkinson, M.R.,… & Mullighan, C.G. (2017). The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia. Nature Genetics, 49(8), 1211-1218.
  • Hardy, K.K., Embry, L., Kairalla, J.A., Helian, S., Devidas, M., Armstrong, D., … & Winick, N. (2017). Neurocognitive Functioning of Children Treated for High-Risk B-Acute Lymphoblastic Leukemia Randomly Assigned to Different Methotrexate and Corticosteroid Treatment Strategies: A Report From the Children’s Oncology Group. Journal of Clinical Oncology, 35(23), 2700-2707.

Subharup Guha, PhD.

  • Jha, C., Li, Y., & Guha, S. (2017). Semiparametric Bayesian analysis of high-dimensional censored outcome data. Statistical Theory and Related Fields, 1(2), 194-204.

Zhiguang Huo, PhD.

  • Arion, D., Huo, Z., Enwright, J. F., Corradi, J. P., Tseng, G., & Lewis, D. A. (2017). Transcriptome alterations in prefrontal pyramidal cells distinguish schizophrenia from bipolar and major depressive disorders. Biological psychiatry, 82(8), 594-600.
  • Enwright III, J. F., Huo, Z., Arion, D., Corradi, J. P., Tseng, G., & Lewis, D. A. (2017). Transcriptome alterations of prefrontal cortical parvalbumin neurons in schizophrenia. Molecular psychiatry.
  • Kim, S., Kang, D., Huo, Z., Park, Y., & Tseng, G. C. (2017). Meta-analytic principal component analysis in integrative omics application. Bioinformatics, 34(8), 1321-1328.
  • Seney, M. L., Huo, Z., Cahill, K., French, L., Puralewski, R., Zhang, J., … & Sibille, E. (2018). Opposite molecular signatures of depression in men and women. Biological psychiatry.
  • Cahill, K. M.^, Huo, Z.^, Tseng, G. C., Logan, R. W., & Seney, M. L. (2018). Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach. Scientific reports, 8(1), 9588. (^: co-first author)

John Kairalla, PhD.

  • Arthur, P. B., Gitlin, L. N., Kairalla, J. A., & Mann, W. C. (2017). Relationship between the number of behavioral symptoms in dementia and caregiver distress: what is the tipping point?. International Psychogeriatrics, published online ahead of print.
  • Slayton, W. B., Schultz, K. R., Kairalla, J. A., Devidas, M., Mi, X., Pulsipher, M. A., … & Borowitz, M. J. (2018). Dasatinib Plus Intensive Chemotherapy in Children, Adolescents, and Young Adults With Philadelphia Chromosome-Positive Acute Lymphoblastic Leukemia: Results of Children’s Oncology Group Trial AALL0622. Journal of Clinical Oncology, published online ahead of print.
  • Winkler, S. L., Kairalla, J. A., & Feng, H. (2018). Association of Admission Functional Status and Assistive Device Provision for Veterans Post-stroke-A Retrospective Study. American journal of physical medicine & rehabilitation, published online ahead of print.

Ira Longini, PhD.

  • Wilder-Smith A, Longini IM, Zuber PL, Barnighausen T, Edmunds WJ, Dean N, Masserey Spicher V, Benissa M, Gessner BD: Public health value of vaccines beyond efficacy: methods, measures and outcomes. BMC Medicine 2017 15:138, https://doi.org/10.1186/s12916-017-0911-8
  • Yang Y, Meng Y, M. Halloran ME, Longini IM: Dependency of vaccine efficacy on pre-exposure and age: A closer look at a tetravalent dengue vaccine. Clinical Infectious Diseases 66, 178-184 (2017) https://doi.org/10.1093/cid/cix766.
  • Wichmann O, Vannice K, Asturias EJ, Albuquerque EJ, Longini IM, Lopez AL, Smith PG, Tissera H, Yoon IK, Hombach J. Live-attenuated tetravalent dengue vaccines: The needs and challenges of post-licensure evaluation of vaccine safety and effectiveness. Vaccine 35, 5535-42 (2017) DOI: 10.1016/j.vaccine.2017.08.066. PMID: 28893477
  • Gsell P-S, Camacho A, Kucharski A, Watson CH, Bagayoko A, Danmadji S, Dean NE, Diallo A, Djidonou H, Doumbia M, Fallah M, Enwere G, Higgs ES, Mauge T, Mory D, Riveros X, Oumar FT, Toure A, Vicari AS, Longini IM, Edmunds WJ , Henao-Restrepo AM, Kieny MP, Keita S: Ring vaccination of adults and children with rVSV-ZEBOV in response to an outbreak of Ebola virus disease in Guinea, 2016: an operational and vaccine safety report. Lancet Infectious Diseases 17, 1276-1284 (2017).
  • Rojas DP, Pavia-Ruz SN, Villanueva S, Granja P, Rodriguez-Castellanos A, Balam-May A, Longini IM, Halloran ME, Manrique P, Gomez-Dantes H: Seroprevalence of antibodies against dengue virus in three urban settings in Yucatan, Mexico. American Journal of Tropical Medicine and Hygiene 98, 1202-1208 (2018). PMCID: PMC5928812
  • Bisanzio D, Dzul-Manzanilla F, Gomez-Dantes H, Pavia-Ruz N, Hladish TJ, Lenhart A, Palacio-Vargas J, Gonzalez Roldan JF, Correa-Moales F, Kuri Morales P, Manrique-Saide P, Longini IM, Halloran ME, Vazquez-Prokopec GM: Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks. PLoS Neglected Tropical Diseases. (2018) https://doi.org/10.1371/journal.pntd.0006298
  • Hladish TJ, Pearson CAB, Rojas DP, Gomez-Dantes H, Halloran ME, Vazquez-Prokopec GM, Longini IM: Effectiveness of indoor residual spraying for reducing dengue burden. PLoS Neglected Tropical Diseases. Published: June 25, 2018 https://doi.org/10.1371/journal.pntd.0006570
  • Zarnitsyna VI, Bulusheva I, Handel A, Longini IM, Halloran ME, Antia R: Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks. PLoS One 13(6): e0199674 https://doi.org/10.1371/journal.pone.0199674 (2018).
  • Dean NE, Halloran ME, Longini IM: Design of vaccine trials during outbreaks with and without a delayed vaccination comparator. Annals of Applied Statistics 12, 330-347 (2018) https://projecteuclid.org/euclid.aoas/1520564475.
  • Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, VeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela J-P, Ozler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M: Simulations for designing and interpreting intervention trials in infectious diseases. BMC Medicine 15 PMID: 29287587 DOI: 10.1186/s12916-017-0985-3 (2018).
  • Pavia-Ruz N, Rojas DP, Villanueva S, Granja P, Balam-May A, Longini IM, Halloran, ME, Manrique-Saide, P, Gomez-Dantes H: Seroprevalence of dengue antibodies in three urban settings in Yucatan, Mexico. American Journal of Tropical Medicine and Hygiene 98, 1202-1208 (2018). PMCID: PMC5928812
  • Tsang T, Chen T, Longini IM, Halloran ME, Yang Y: Transmissibility of Norovirus in Urban vs. Rural Households: Observations from a Large Community Outbreak in China. Epidemiology (2018 May 29. doi: 10.1097/EDE.0000000000000855. [Epub ahead of print]) PMID: 29847497.
  • Sultana,M, Hasan NA, Sadique A, Ahmed,KU, Islam,A, Hossain, Longini IM, Nizam A, Huq A, Siddique AK, Sack DE, Sack RB, Colwell RA, Alama M: Biofilms comprise a component of the annual cycle of vibrio cholerae in the Bay of Bengal estuary, mBio 9 (doi: 10.1128/mBio.00483-1817 April 2018 mBio vol. 9 no. 2 e00483-18).

Susan McGorray, PhD.

  • Anderson LA, Levy JK, McManus CM, McGorray SP, Leutenegger CM, Piccione J, Blackwelder LK, Tucker SJ (2018). Prevalence of enteropathogens in cats with and without diarrhea in four different management models for unowned cats in the southeast United States. Veterinary Journal 236:49-55.
  • Scheidell JD, Kumar PC, Campion T, Quinn K, Beharie N, McGorray SP, Kahn MR (2017). Child sexual abuse and HIV-related substance Use and sexual risk across the life course among males and females (2017). Journal of Child Sexual Abuse 25(5):519-534.
  • Scheidell JD, Quinn K, McGorray SP, Frueh BC, Beharie NN, Cottleer LB, Khan MR (2018). Childhood traumatic experiences and the association with marijuana and cocaine use in adolescence through adulthood. Addiction 113(1):44-56.
  • Wheeler T, Patel N, McGorray S (2017). Effect of aligner material on orthodontic tooth movement. Journal of Aligner Orthodontics. 1(1):21-27.

Arlene Naranjo, PhD.

  • London, W. B., Bagatell, R., Weigel, B. J., Fox, E., Guo, D., Van Ryn, C., Naranjo, A., & Park, J. R. (2017). Historical Time to Disease Progression and Progression”Free Survival in Patients with Recurrent/Refractory Neuroblastoma Treated in the Modern Era on Children’s Oncology Group Early”Phase Trials. Cancer, 123(24), 4914-4923.
  • Yanik, G.A., Parisi, M.T., Naranjo, A., Nadel, H., Gelfand, M.J., Park, J.R., Ladenstein, R.L., Poetschger, U., Boubaker, A., Valteau-Couanet, D., Lambert, B., Castellani, M., Bar-Sever, Z., Oudoux, A., Kaminska, A., Kreissman, S.G., Shulkin, B.L., & Matthay, K.K. (2018). Validation of Postinduction Curie Scores in High-Risk Neuroblastoma: A Children’s Oncology Group and SIOPEN Group Report on SIOPEN/HR-NBL1. Journal of Nuclear Medicine, 59(3), 502-508.
  • Ladenstein, R. and Lambert,B., Pötschger, U., Lewington, V., Castellani, M., Bar-Sever, Z., Oudoux, A., Kaminska, A., Taborska, K., Biassoni, L., Yanik, G.A., Naranjo, A., Parisi, M.T., Shulkin, B.L., Nadel, H., Gelfand, M.J., Matthay, K.K., Park, J.R., Kreissman, S.G., Valteau-Couanet, D., & Boubaker, A. (2018). Validation of the mIBG Skeletal SIOPEN Scoring Method in Two Independent High-Risk Neuroblastoma Populations: The SIOPEN/HR-NBL1 and COG-A3973 Trials. European Journal of Nuclear Medicine and Molecular Imaging, 45(2), 292-305.
  • Erbe, A.K., Wang, W., Carmichael, L., Kim, K., Mendonça, E.A., Song, Y., Hess, D., Reville, P.K., London, W.B., Naranjo, A., Hank, J.A., Diccianni, M.B., Reisfeld, R.A., Gillies, S.D., Matthay, K.K., Cohn, S.L., Hogarty, M.D., Maris, J.M., Park, J.R., Ozkaynak, M.F., Gilman, A.L., Yu, A.L., & Sondel, P.M. (2018). Neuroblastoma Patients’ KIR and KIR-Ligand Genotypes Influence Clinical Outcome for Dinutuximab-Based Immunotherapy: A Report from the Children’s Oncology Group. Clinical Cancer Research, 24(1), 189-196.
  • De Alarcon, P.A., Matthay, K.K., London, W.B., Naranjo, A., Tenney, S.C., Panzer, J.A., Hogarty, M.D., Park, J.R., Maris, J.M., & Cohn, S.L. (2018). Intravenous Immunoglobulin with Prednisone and Risk-Adapted Chemotherapy for Children with Opsoclonus Myoclonus Ataxia Syndrome Associated with Neuroblastoma (ANBL00P3): A Randomised, Open-Label, Phase 3 Trial. The Lancet Child & Adolescent Health, 2(1), 25-34.
  • Campbell, K., Gastier-Foster, J., Naranjo, A., Van Ryn, C., Bagatell, R., Matthay, K.K., London, W.B., Hogarty, M., Park, J.R., & DuBois, S.G. (2017). Association of MYCN Copy Number with Clinical Features, Tumor Biology, and Outcomes in Neuroblastoma: A Report from the Children’s Oncology Group. Cancer, 123(21), 4224-4235.
  • Niemas-Teshiba, R., Matsuno, R., Wang, L.L., Tang, X.X., Chiu, B., Zeki, J., Coburn, J., Ornell, K., Naranjo, A., Van Ryn, C., London, W.B., Hogarty, M.D., Gastier-Foster, J.M., Look, A.T., Park, J.R., Maris, J.M., Cohn, S.L., Seeger, R.C., Asgharzadeh, S., Ikegaki, N., & Shimada, H. (2018). MYC-Family Protein Overexpression and Prominent Nucleolar Formation Represent Prognostic Indicators and Potential Therapeutic Targets for Aggressive High-MKI Neuroblastomas: A Report from the Children’s Oncology Group. Oncotarget, 9(5), 6416-6432.
  • Ozkaynak, M.F., Gilman, A.L., Yu, A.L., London, W.B., Naranjo, A., Tenney, S., Diccianni, M.B., Smith, M., Kesser, K.S., Seeger, R., Reynolds, C.P., Smith, L.M., Shulkin, B.L., Parisi, M., Maris, J.M., Park, J.R., & Sondel, P.M. (2018). A Comprehensive Safety Trial of Chimeric Antibody 14.18 with GM-CSF, IL-2 and Isotretinoin in High-Risk Neuroblastoma Patients Following Myeloablative Therapy: Children’s Oncology Group Study ANBL0931. Frontiers in Immunology, 9, 1355.

Qinglin Pei, PhD.

  • McCarten, K. M., Metzger, M. L., Drachtman, R. A., Pei, Q., Friedman, D. L., Schwartz, C. L., & Kelly, K. M. (2018). Significance of pleural effusion at diagnosis in pediatric Hodgkin lymphoma: a report from Children’s Oncology Group protocol AHOD0031. Pediatric radiology, 1-9.
  • Keller, F. G., Castellino, S. M., Chen, L., Pei, Q., Voss, S. D., McCarten, K. M., … & Schwartz, C. L. (2018). Results of the AHOD0431 trial of response adapted therapy and a salvage strategy for limited stage, classical Hodgkin lymphoma: A report from the Children’s Oncology Group. Cancer.
  • Dvorak, C. C., Satwani, P., Stieglitz, E., Cairo, M. S., Dang, H., Pei, Q., … & Parker, J. S. (2018). Disease burden and conditioning regimens in ASCT1221, a randomized phase II trial in children with juvenile myelomonocytic leukemia: A Children’s Oncology Group study. Pediatric blood & cancer, 65(7), e27034.
  • Parzuchowski, A., Bush, R., Pei, Q., Friedman, D. L., FitzGerald, T. J., Wolden, S. L., … & Appel, B. (2018). Patterns of Involved-Field Radiation Therapy Protocol Deviations in Pediatric Versus Adolescent and Young Adults With Hodgkin Lymphoma: A Report From the Children’s Oncology Group AHOD0031. International Journal of Radiation Oncology* Biology* Physics, 100(5), 1119-1125.
  • Rose D.K., Nadeau S.E., Wu S.S., Tilson J.K., Dobkin B.H., Pei Q., Duncan P.W. (2017). Locomotor Training and Strength and Balance Exercises for Walking Recovery After Stroke: Response to Number of Training Sessions. Phys Ther. 97(11):1066 – 1074.(PMID: 29077960)

Peihua Qiu, PhD.

  • Proceedings of the Pacific Rim Statistical Conference for Production Engineering, (Editors: Choi, D., Jang, D., Lai, T.L., Lee, Y., Lu, Y., Ni, J., Qian, P., Qiu, P., and Tiao, G.), 2018, Singapore: Springer.
  • Qiu, P., and You, L. (2018), “Recent Research in Dynamic Screening System for Sequential Process Monitoring,” In Proceedings of the Pacific Rim Statistical Conference for Production Engineering (Choi et al. ed.), 85-93, Springer.
  • Iqbal, A., Khan, A., George, T., Tan, S.A., Qiu, P., Yang, K., Trevino, J., and Hughes, S.J. (2018), “Objective preoperative parameters predict difficult pelvic dissections and clinical outcomes,” Journal of Surgical Research, 232, 15-25.
  • Yang, K., and Qiu, P. (2018), “Spatio-Temporal Incidence Rate Data Analysis By Nonparametric Regression,” Statistics in Medicine, 37, 2094-2107.
  • Zang, Y., and Qiu, P. (2018), “Phase I Monitoring of Spatial Surface Data from 3D Printing,” Technometrics, 60(2), 169-180.
  • Delitto, D., George, T.J., Loftus, T.J., Qiu, P., Chang, G.J., Allegra, C.J., Hall, W.A., Hughes, S.J., Tan, S.A., Shaw, C.M., and Iqbal, A. (2018), “Prognostic Value of Clinical vs Pathologic Stage in Rectal Cancer Patients Receiving Neoadjuvant Therapy,” Journal of the National Cancer Institute, 110(5), 460-466.
  • Park, K.Y., and Qiu, P. (2018), “Evaluation of the Treatment Time-Lag Effect for Survival Data,” Life-Time Data Analysis, 24, 310-327.
  • Ross, K., Qiu, P., You, L., and Wing, R. (2018), “Characterizing the Pattern of Weight Loss and Regain in Adults,” Obesity, 26(2), 318-323.
  • Qiu, P. (2018), “Some Perspectives On Nonparametric Statistical Process Control,” Journal of Quality Technology, 50, 49-65.
  • Qiu, P. (2018), “Jump regression, image processing, and quality control (with discussions),” Quality Engineering, 30, 137-153.
  • Qiu, P. (2018), “Jump regression, image processing, and quality control – rejoinder,” Quality Engineering, 30, 160-162.
  • Sonawane Deshmukh, K., Suk, R., Chiao, E.Y., Chhatwal, J., Qiu, P., Wilkin, T., Nyitray, A.G., Sikora, A., and Deshmukh, A.A. (2017), “Oral Human Papillomavirus Infection: Differences in Prevalence Between Sexes and Concordance With Genital Human Papillomavirus Infection, NHANES 2011 to 2014,” Annals of Internal Medicine, 167, 714-724.
  • Li, J., and Qiu, P. (2017), “Construction of An Efficient Multivariate Dynamic Screening System,” Quality and Reliability Engineering International, 33, 1969-1981.

Samuel Wu, PhD.

  • Lu X, He Y, Wu SS. Interval estimation in multi-stage drop-the-losers designs. Statistical Method in Medical Research. 27(1):221-233. (PMID: 26980742)
  • George SZ, Beneciuk JM, Lentz TA,Wu SS,Dai Y, Bialosky JE, Zeppieri G Jr. (2018). Optimal Screening for Prediction of Referral and Outcome (OSPRO) for Musculoskeletal Pain Conditions: Results From the Validation Cohort. J Orthop Sports Phys Ther.
    48(6):460-475. (PMID: 29629615)
  • Beneciuk JM, Lentz TA, He Y, Wu SS, George SZ. (2018). Prediction of persistent musculoskeletal pain at 12 Months: a secondary analysis of the Optimal Screening for Prediction of Referral and Outcome (OSPRO) Validation Cohort study. Phys Ther.
    98(5): 290 – 301. (PMID: 29669081)
  • Woods AJ, Cohen R, Marsiske M, Alexander GE, Czaja SJ,Wu S. (2018). Augmenting cognitive training in older adults (The ACT Study): Design and Methods of a Phase III tDCS and cognitive training trial. Contemporary Clinical Trials. 65: 19 – 32. (PMID:
    29313802)
  • Gitlin LN, Arthur P, Piersol C, Hessels V,Wu SS, Dai Y, Mann WC. (2018). Targeting Behavioral Symptoms and Functional Decline in Dementia: A Randomized Clinical Trial. J Am Geriatr Soc. 66(2):339 – 345. (PMID: 29192967)
  • Rose DK, Nadeau SE, Wu SS, Tilson JK, Dobkin BH, Pei Q, Duncan PW. (2017). Locomotor Training and Strength and Balance Exercises for Walking Recovery After Stroke: Response to Number of Training Sessions. Phys Ther. 97(11):1066 – 1074. (PMID: 29077960)
  • Layne AS, Krehbiel LM, Mankowski RT, Anton SD, Leeuwenburgh C, Pahor M, Sandesara B, Wu SS, Buford TW. (2017). Resveratrol and exercise to treat functional limitations in late life: design of a randomized controlled trial. Contemp Clin Trials
    Commun. 6:58 – 63. (PMID: 28944303)
  • Burciu RG, Ofori E, Archer DB,Wu SS, Pasternak O, McFarland NR, Okun MS, Vaillancourt DE. (2017). Progression marker of Parkinson’s disease: a 4-year multi-site imaging study. Brain. 140(8):2183 – 2192. (PMID: 28899020)

Yang Yang, PhD.

  • Yang Yang, Ya Meng, M Elizabeth Halloran, Ira M Longini; Dependency of Vaccine Efficacy on Preexposure and Age: A Closer Look at a Tetravalent Dengue Vaccine, Clinical Infectious Diseases, Volume 66, Issue 2, 6 January 2018, Pages 178-184, https://doi.org/10.1093/cid/cix766
  • Porter M, Hagan H, Klassen RA, Yang Y, Seehusen D and Carek PJ. Burnout and resiliency among family medicine program directors. Family medicine. 2018; 50(2):106-12.
  • Ma M, Liu C, Wu M, Zhao T, Wang G, Yang Y, et al. Influenza A(H7N9) Virus Antibody Responses in Survivors 1 Year after Infection, China, 2017. Emerg Infect Dis. 2018;24(4):663-672. https://dx.doi.org/10.3201/eid2404.171995.
  • Ma M-J, Zhao T, Chen S-H, Xia X, Yang X-X, Wang G-L, Fang L-Q, Ma G-Y, Wu M-N, Qian Y-H, Dean NE, Yang Y, Lu B, and Cao W-C. Avian Influenza A Virus Infection among Workers at Live Poultry Markets, China, 2013-2016. Emerg Infect Dis. 2018;24(7):1246-1256. https://dx.doi.org/10.3201/eid2407.172059.
  • Ning P, Cai M, Cheng P, Zhang Y, Schwebel DC, Yang Y, Zhang W, Cheng X, Gao Y, Ling X and Hu G. Trends in injury morbidity in China, 1993-2013: A longitudinal analysis of population-based survey data. Accident Analysis and Prevention. 2018;113:179-186.

Baming Zou, PhD.

  • A Model-Based Conditional Power Assessment for Decision Making in Randomized Controlled Trial Studies